Mikrobiol. Z. 2017; 79(4):53-65. Russian.
doi: https://doi.org/10.15407/microbiolj79.04.053
Identification of Consanguinity of the Strain Streptomyces globisporus 1912-2
Polishchuk L.V., Lukyanchuk V.V.
Zabolotny Institute of Microbiology and Virology, NAS of Ukraine
154 Akad. Zabolotny Str., Kyiv, 03143, Ukraine
The purpose of this reseach was to clarify close relation of the strain S. globisporus 1912-2 and to defne the lowest level taxonomic group (clade), to which this strain belonged. Methods. In silico comparative tests of primary structures of genomes of the strain S. globisporus 1912-2 and number of strains of Streptomyces spp. on the database “Genome” of the server of the National Center for Biotechnology Information were conducted using the software package of the Basic Local Alignment Search Tool of the above mentioned server. Results. The closely relationship of the strain S. globisporus 1912-2 with strains of the S. griseus clade was defned. The greatest affnity with a strain of S. globisporus C–1027 were equally the results of in silico analysis of the primary structures of Streptomycetes genomes from the database “Genome” and the said strain or comparative tests in silico of the sequences only of their 16S rRNA genes. While the analysis in silico of nucleotide sequences of 6 genes of Streptomyces strains showed the greatest affnity of the strain S. globisporus 1912-2 with the strain S. griseus NBRC13350. Conclusions. It was approved that the strain of S. globisporus 1912-2 was a member of the S. griseus clade.
Key words: a clade, in silico analysis, S. globisporus 1912-2, a primary structure of DNA, a gene.
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